ERR1378538.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378538.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	267912
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC	2215	0.8267640120636627	Illumina Paired End PCR Primer 2 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGATA	325	42.92112	30
TCTCGTA	340	42.35101	41
CTCGTAT	335	42.311504	42
TCGTATG	335	42.311504	43
CGATACT	335	42.311504	32
GACCGAT	330	42.270798	29
GAGACCG	330	42.270798	27
AGACCGA	335	41.639893	28
CCGATAC	345	41.085083	31
CATCTCG	345	41.085083	39
ATCTCGT	360	40.623146	40
CGTATGC	350	40.498154	44
ATACTCA	360	39.373203	34
CCGAGAC	355	39.293983	25
CGGTTCA	375	37.798275	9
ACTCATC	375	37.798275	36
ATGCCGA	375	37.798275	22
TGCCGAG	375	37.798275	23
AGCGGTT	370	37.700985	7
CGGAAGA	355	37.41361	1