FastQCFastQC Report
Mon 6 Jun 2016
ERR1378532.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378532.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences344214
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC18710.543557205691808Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2350.044.0405644
CCGTAGT2350.044.0405631
CGTAGTC2350.044.0405632
ATCTCGT2400.043.1230540
TATCTCG2400.043.1230539
TCGTATG2400.043.1230543
ACCGTAG2400.043.1230530
GACCGTA2350.043.0831629
AGACCGT2350.043.0831628
GAGACCG2300.042.06331627
CTCGTAT2500.041.3981342
TCTCGTA2500.041.3981341
GTATGCC2600.039.80589345
TAGTCTA2700.038.33160434
CCGAGAC2550.037.9394625
CGGTTCA2750.037.6346639
GTAGTCT2750.037.63466333
GCGGTTC2700.037.50928
ATGCCGA2650.037.356822
AAGAGCG2750.036.827224