FastQCFastQC Report
Mon 6 Jun 2016
ERR1378529.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378529.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484312
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCC14800.30558813326946266Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTC1950.044.9987629
CGTATGC2150.041.85931444
ATCTCGT2200.040.90796340
TCTCGTA2200.040.90796341
CCGTCAT2150.040.8128331
GTATGCC2300.040.10759445
GCGGTTC2250.040.003038
CTCGTAT2250.039.99889842
AATCTCG2250.039.99889839
ACCGTCA2200.039.88526530
TCGTATG2350.039.2542443
AGCGGTT2300.039.13347
AGAGCGG2300.039.13345
CGTCATC2300.039.1293632
GAGACCG2250.038.99892427
GAGCGGT2350.038.300776
CGGTTCA2350.038.2968189
CCGAGAC2350.038.29681825
AGACCGT2300.038.15112728
TGCCGAG2300.038.15112723