Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378529.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 484312 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCC | 1480 | 0.30558813326946266 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGTC | 195 | 0.0 | 44.99876 | 29 |
CGTATGC | 215 | 0.0 | 41.859314 | 44 |
ATCTCGT | 220 | 0.0 | 40.907963 | 40 |
TCTCGTA | 220 | 0.0 | 40.907963 | 41 |
CCGTCAT | 215 | 0.0 | 40.81283 | 31 |
GTATGCC | 230 | 0.0 | 40.107594 | 45 |
GCGGTTC | 225 | 0.0 | 40.00303 | 8 |
CTCGTAT | 225 | 0.0 | 39.998898 | 42 |
AATCTCG | 225 | 0.0 | 39.998898 | 39 |
ACCGTCA | 220 | 0.0 | 39.885265 | 30 |
TCGTATG | 235 | 0.0 | 39.25424 | 43 |
AGCGGTT | 230 | 0.0 | 39.1334 | 7 |
AGAGCGG | 230 | 0.0 | 39.1334 | 5 |
CGTCATC | 230 | 0.0 | 39.12936 | 32 |
GAGACCG | 225 | 0.0 | 38.998924 | 27 |
GAGCGGT | 235 | 0.0 | 38.30077 | 6 |
CGGTTCA | 235 | 0.0 | 38.296818 | 9 |
CCGAGAC | 235 | 0.0 | 38.296818 | 25 |
AGACCGT | 230 | 0.0 | 38.151127 | 28 |
TGCCGAG | 230 | 0.0 | 38.151127 | 23 |