ERR1378525.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378525.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	371976
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCC	3162	0.850054842247887	Illumina Paired End PCR Primer 2 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCTGTA	265	44.148567	32
CGTATGC	275	43.3613	44
TATCTCG	275	43.3613	39
GACCGCT	265	43.299557	29
CTCGTAT	280	42.586994	42
ACCGCTG	275	42.543163	30
GAGACCG	270	42.497715	27
AGACCGC	270	42.497715	28
TCTCGTA	290	41.118477	41
TCGTATG	290	41.118477	43
GCGGTTC	300	40.50327	8
ATCTCGT	300	39.747864	40
CGGTTCA	300	39.747864	9
CCGCTGT	300	38.997902	31
CCGAGAC	300	38.997902	25
CGGAAGA	295	38.906673	1
AATGCCG	310	38.465675	21
TGCCGAG	305	38.358597	23
AGCGGTT	325	37.38763	7
GAGCGGT	320	37.27364	6