FastQCFastQC Report
Mon 6 Jun 2016
ERR1378524.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378524.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311860
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC21080.6759443339960238Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2700.044.1654144
CCGTCGT2700.044.1654131
TATCTCG2700.044.1654139
GTCGTAT2700.044.1654133
CGTCGTA2700.044.1654132
ACCGTCG2700.044.1654130
CTCGTAT2750.043.36239642
GACCGTC2700.043.332129
AGACCGT2700.043.332128
CGTATAT2800.042.58807435
TCTCGTA2800.042.58807441
TCGTATG2800.042.58807443
TCGTATA2900.041.89535534
ATCTCGT2850.041.8409140
GAGACCG2800.041.78452327
GTATGCC2900.041.1195245
CGGTTCA2900.040.3436789
CGAGACC3000.038.9988926
GTATATC3100.038.46664436
AGAGCGG3050.038.3657155