Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378524.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 311860 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC | 2108 | 0.6759443339960238 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 270 | 0.0 | 44.16541 | 44 |
CCGTCGT | 270 | 0.0 | 44.16541 | 31 |
TATCTCG | 270 | 0.0 | 44.16541 | 39 |
GTCGTAT | 270 | 0.0 | 44.16541 | 33 |
CGTCGTA | 270 | 0.0 | 44.16541 | 32 |
ACCGTCG | 270 | 0.0 | 44.16541 | 30 |
CTCGTAT | 275 | 0.0 | 43.362396 | 42 |
GACCGTC | 270 | 0.0 | 43.3321 | 29 |
AGACCGT | 270 | 0.0 | 43.3321 | 28 |
CGTATAT | 280 | 0.0 | 42.588074 | 35 |
TCTCGTA | 280 | 0.0 | 42.588074 | 41 |
TCGTATG | 280 | 0.0 | 42.588074 | 43 |
TCGTATA | 290 | 0.0 | 41.895355 | 34 |
ATCTCGT | 285 | 0.0 | 41.84091 | 40 |
GAGACCG | 280 | 0.0 | 41.784523 | 27 |
GTATGCC | 290 | 0.0 | 41.11952 | 45 |
CGGTTCA | 290 | 0.0 | 40.343678 | 9 |
CGAGACC | 300 | 0.0 | 38.99889 | 26 |
GTATATC | 310 | 0.0 | 38.466644 | 36 |
AGAGCGG | 305 | 0.0 | 38.365715 | 5 |