ERR1378523.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378523.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	342835
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCC	2153	0.6279988915950822	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACCGTA	235	43.085106	29
GAGCGGT	245	42.2449	6
GAGACCG	240	42.187504	27
ACCGTAC	240	42.187504	30
CGTACTA	235	42.12766	32
AGAGCGG	250	41.399998	5
CTCGTAT	245	41.32653	42
TCTCGTA	245	41.32653	41
AGACCGT	245	41.32653	28
AAGAGCG	255	40.588234	4
CGGTTCA	255	40.588234	9
CGTATGC	250	40.499996	44
CCGAGAC	250	40.499996	25
TCGTATG	250	40.499996	43
CCGTACT	245	40.408165	31
GTACTAC	245	40.408165	33
ATCTCGT	255	39.705883	40
CGGAAGA	230	39.130436	1
GCGGTTC	265	39.056602	8
GTATGCC	260	38.942307	45