ERR1378521.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378521.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311168
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC	2155	0.6925519333607569	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	275	44.180714	44
CTCGTAT	275	44.180714	42
TCGTATG	275	44.180714	43
CCGTCAC	285	42.630512	31
TCTCGTA	285	42.630512	41
CGTCACA	285	42.630512	32
GAGCGGT	290	41.895504	6
AGAGCGG	295	41.192028	5
CGGTTCA	295	41.185413	9
ACCGTCA	295	41.185413	30
AGCGGTT	305	40.572754	7
ATCTCGT	300	40.49899	40
GCGGTTC	300	40.49899	8
GACCGTC	300	40.49899	29
GAGACCG	300	40.49899	27
TATCTCG	300	40.49899	39
CCGAGAC	295	40.422718	25
GTATGCC	305	39.835068	45
AAGAGCG	300	39.755394	4
CGAGACC	310	39.192566	26