ERR1378517.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378517.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394115
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC	1590	0.40343554546261884	Illumina Paired End PCR Primer 2 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACCGAT	255	42.35294	29
CGATATG	260	41.538464	32
ACCGATA	270	40.833332	30
GAGACCG	265	40.75472	27
CCGATAT	270	40.0	31
GAGCGGT	270	40.0	6
AGACCGA	270	40.0	28
CGTATGC	270	39.166664	44
GTATGCC	270	39.166664	45
TCGTATG	270	39.166664	43
CGGTTCA	280	38.571426	9
AGAGCGG	280	38.571426	5
ATCTCGT	275	38.454544	40
TCTCGTA	280	37.767857	41
AATCTCG	280	37.767857	39
GCGGTTC	290	37.241383	8
AAGAGCG	290	37.241383	4
CTCGTAT	285	37.105263	42
CGGAAGA	295	36.61017	1
AGCGGTT	295	36.61017	7