FastQCFastQC Report
Mon 6 Jun 2016
ERR1378515.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378515.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064697
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCACG250.00210532336.00597445
TGACCCG300.005147642529.99934237
TACTGCG300.00514882529.99793216
TATGCCG751.6956947E-624.00285543
CGTATGC1201.1028533E-820.62842244
CGATTAG1109.9847966E-820.45409632
GATCGGA550.00393792220.45313526
ACCGATT1251.7684215E-819.79863727
GACCGAT1102.2561344E-618.40868829
AGACCGA1153.4489021E-617.6083128
ATGCCGA1802.0736479E-1017.49879519
ATCTCGT1305.782931E-717.30731440
CCGATTA1305.782931E-717.30731428
TCGTATG1459.6522854E-817.07099543
AATGCCG1853.074092E-1017.02585218
CTCGTAT1358.5871034E-716.66551842
ATGCCGT1104.6304136E-516.36635244
AGAGCGG1956.4574124E-1016.1565272
CGGTTCA2101.07320375E-1016.0740976
TGCCGAG2009.295036E-1015.74891620
Produced by FastQC (version 0.11.5)