Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378513.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 637113 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC | 3286 | 0.5157640795274935 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC | 2723 | 0.4273967098458202 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1118 | 0.1754790751405167 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGCCGT | 365 | 0.0 | 39.45763 | 44 |
TATGCCG | 370 | 0.0 | 38.924416 | 43 |
TGCCGTC | 385 | 0.0 | 38.576878 | 45 |
GATCGGA | 240 | 0.0 | 25.310114 | 26 |
AGATCGG | 235 | 0.0 | 24.89127 | 25 |
CGGAAGA | 685 | 0.0 | 24.002216 | 1 |
ATCGGAA | 255 | 0.0 | 23.821287 | 27 |
TCGCCGT | 50 | 0.0022647502 | 22.49788 | 26 |
GACCGAA | 750 | 0.0 | 21.597965 | 29 |
CGTATGC | 735 | 0.0 | 21.4316 | 44 |
AGACCGA | 760 | 0.0 | 21.313782 | 28 |
ATCTCGT | 770 | 0.0 | 20.744799 | 40 |
GTATGCC | 760 | 0.0 | 20.726612 | 45 |
TCGTATG | 760 | 0.0 | 20.726612 | 43 |
GAGACCG | 785 | 0.0 | 20.634998 | 27 |
CCGAATA | 785 | 0.0 | 20.634998 | 31 |
CTCGTAT | 775 | 0.0 | 20.61258 | 42 |
TCTCGTA | 775 | 0.0 | 20.61258 | 41 |
ACCGAAT | 790 | 0.0 | 20.504396 | 30 |
CGAATAC | 780 | 0.0 | 20.47884 | 32 |