FastQCFastQC Report
Mon 6 Jun 2016
ERR1378513.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378513.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences637113
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC32860.5157640795274935Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC27230.4273967098458202Illumina Paired End PCR Primer 2 (96% over 31bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT11180.1754790751405167Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT3650.039.4576344
TATGCCG3700.038.92441643
TGCCGTC3850.038.57687845
GATCGGA2400.025.31011426
AGATCGG2350.024.8912725
CGGAAGA6850.024.0022161
ATCGGAA2550.023.82128727
TCGCCGT500.002264750222.4978826
GACCGAA7500.021.59796529
CGTATGC7350.021.431644
AGACCGA7600.021.31378228
ATCTCGT7700.020.74479940
GTATGCC7600.020.72661245
TCGTATG7600.020.72661243
GAGACCG7850.020.63499827
CCGAATA7850.020.63499831
CTCGTAT7750.020.6125842
TCTCGTA7750.020.6125841
ACCGAAT7900.020.50439630
CGAATAC7800.020.4788432