Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378509.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 775083 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTAAATCTCGTATGCCGTC | 5173 | 0.6674123932533677 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTAAATCTCGTATGCC | 5057 | 0.6524462541431046 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1805 | 0.23287828529331694 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCTAGA | 20 | 7.031564E-4 | 45.00039 | 32 |
TATGCCG | 585 | 0.0 | 37.315235 | 43 |
ATGCCGT | 600 | 0.0 | 36.382355 | 44 |
ACGCTAG | 25 | 0.002106597 | 36.00031 | 31 |
TTACGAC | 25 | 0.0021079315 | 35.995667 | 22 |
TGCCGTC | 615 | 0.0 | 35.49498 | 45 |
GGCGGAC | 30 | 0.0051411497 | 30.006067 | 44 |
CGGAAGA | 980 | 0.0 | 25.501364 | 1 |
AACGCTA | 45 | 0.0012261326 | 25.000216 | 30 |
ATCGGAA | 355 | 0.0 | 24.084715 | 27 |
GATCGGA | 360 | 0.0 | 23.748672 | 26 |
AGATCGG | 390 | 0.0 | 22.49729 | 25 |
TCGGAAG | 400 | 0.0 | 21.937689 | 28 |
GTATGCC | 1130 | 0.0 | 21.707928 | 45 |
CGAACTA | 1110 | 0.0 | 21.486671 | 32 |
CCGAGAT | 415 | 0.0 | 21.142033 | 22 |
CGTATGC | 1145 | 0.0 | 21.030453 | 44 |
ACCGAAC | 1135 | 0.0 | 21.013397 | 30 |
TCTCGTA | 1140 | 0.0 | 20.926634 | 41 |
GACCGAA | 1145 | 0.0 | 20.829874 | 29 |