Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378508.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1271326 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCCGTC | 3745 | 0.29457432633329295 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCC | 2726 | 0.21442179267945438 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1883 | 0.14811307249281458 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 470 | 0.0 | 34.949223 | 43 |
ATGCCGT | 515 | 0.0 | 31.895407 | 44 |
TGCCGTC | 530 | 0.0 | 30.992706 | 45 |
ATCGGAA | 340 | 0.0 | 26.46825 | 27 |
TCGGAAG | 385 | 0.0 | 25.712015 | 28 |
GATCGGA | 360 | 0.0 | 24.997795 | 26 |
AGATCGG | 385 | 0.0 | 23.37456 | 25 |
AATGCCG | 1240 | 0.0 | 21.590836 | 18 |
CGGAAGA | 700 | 0.0 | 21.549917 | 1 |
CGACATA | 780 | 0.0 | 21.055832 | 29 |
TGCCGAG | 1275 | 0.0 | 20.82169 | 20 |
CTCGTAT | 810 | 0.0 | 20.55374 | 39 |
ATGCCGA | 1300 | 0.0 | 20.421274 | 19 |
CGTATGC | 825 | 0.0 | 19.908117 | 41 |
GAATGCC | 1350 | 0.0 | 19.831583 | 17 |
GACCGAC | 845 | 0.0 | 19.702402 | 26 |
TCTCGTA | 840 | 0.0 | 19.551844 | 38 |
CCGACAT | 850 | 0.0 | 19.321823 | 28 |
TCGTATG | 855 | 0.0 | 19.208832 | 40 |
CGGTTCA | 1375 | 0.0 | 19.152803 | 6 |