FastQCFastQC Report
Mon 6 Jun 2016
ERR1378508.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378508.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1271326
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCCGTC37450.29457432633329295Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCC27260.21442179267945438Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT18830.14811307249281458Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4700.034.94922343
ATGCCGT5150.031.89540744
TGCCGTC5300.030.99270645
ATCGGAA3400.026.4682527
TCGGAAG3850.025.71201528
GATCGGA3600.024.99779526
AGATCGG3850.023.3745625
AATGCCG12400.021.59083618
CGGAAGA7000.021.5499171
CGACATA7800.021.05583229
TGCCGAG12750.020.8216920
CTCGTAT8100.020.5537439
ATGCCGA13000.020.42127419
CGTATGC8250.019.90811741
GAATGCC13500.019.83158317
GACCGAC8450.019.70240226
TCTCGTA8400.019.55184438
CCGACAT8500.019.32182328
TCGTATG8550.019.20883240
CGGTTCA13750.019.1528036