FastQCFastQC Report
Mon 6 Jun 2016
ERR1378507.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378507.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1255801
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC27900.2221689582983291Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCC20190.1607738805750274Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT15080.1200827201125019Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3600.040.00955643
TGCCGTC4100.034.0325245
ATGCCGT4200.033.2222244
ATCGGAA3550.025.98281327
GATCGGA3500.025.71121626
AATGCCG9600.025.54382518
GACCGTA5850.024.99701526
AGATCGG3700.024.92945525
CCGTATG5950.024.57689728
CGTATGC5900.024.4067841
TCTCGTA5900.024.40386438
CTCGTAT5900.024.02255439
ACCGTAT6100.023.97254627
ATGCCGA10050.023.95236219
TCGGAAG3900.023.6510228
AGACCGT6100.023.60373725
CGTATGA6250.023.39720329
TCGTATG6150.023.04602840
TGCCGAG10600.022.70955320
ATCTCGT6350.022.32016837