Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378507.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1255801 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC | 2790 | 0.2221689582983291 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCC | 2019 | 0.1607738805750274 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1508 | 0.1200827201125019 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 360 | 0.0 | 40.009556 | 43 |
TGCCGTC | 410 | 0.0 | 34.03252 | 45 |
ATGCCGT | 420 | 0.0 | 33.22222 | 44 |
ATCGGAA | 355 | 0.0 | 25.982813 | 27 |
GATCGGA | 350 | 0.0 | 25.711216 | 26 |
AATGCCG | 960 | 0.0 | 25.543825 | 18 |
GACCGTA | 585 | 0.0 | 24.997015 | 26 |
AGATCGG | 370 | 0.0 | 24.929455 | 25 |
CCGTATG | 595 | 0.0 | 24.576897 | 28 |
CGTATGC | 590 | 0.0 | 24.40678 | 41 |
TCTCGTA | 590 | 0.0 | 24.403864 | 38 |
CTCGTAT | 590 | 0.0 | 24.022554 | 39 |
ACCGTAT | 610 | 0.0 | 23.972546 | 27 |
ATGCCGA | 1005 | 0.0 | 23.952362 | 19 |
TCGGAAG | 390 | 0.0 | 23.65102 | 28 |
AGACCGT | 610 | 0.0 | 23.603737 | 25 |
CGTATGA | 625 | 0.0 | 23.397203 | 29 |
TCGTATG | 615 | 0.0 | 23.046028 | 40 |
TGCCGAG | 1060 | 0.0 | 22.709553 | 20 |
ATCTCGT | 635 | 0.0 | 22.320168 | 37 |