Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378504.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 786276 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC | 2205 | 0.2804358774781374 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCCGTC | 1988 | 0.25283742604378107 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 968 | 0.12311198612192156 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 225 | 0.0 | 38.008114 | 43 |
TGCCGTC | 240 | 0.0 | 35.632603 | 45 |
ATGCCGT | 245 | 0.0 | 34.905407 | 44 |
ACCGCTC | 30 | 0.005148913 | 29.996864 | 13 |
ACTAACG | 30 | 0.005148913 | 29.996864 | 11 |
CTCGTAT | 535 | 0.0 | 23.551935 | 42 |
CGAGTAA | 530 | 0.0 | 23.3481 | 32 |
CGGAAGA | 535 | 0.0 | 23.14903 | 1 |
GAGACCG | 525 | 0.0 | 23.14191 | 27 |
TCTCGTA | 540 | 0.0 | 22.917185 | 41 |
ACCGAGT | 540 | 0.0 | 22.915728 | 30 |
TATCTCG | 545 | 0.0 | 22.70549 | 39 |
CGTATGC | 565 | 0.0 | 21.907331 | 44 |
AGACCGA | 555 | 0.0 | 21.890995 | 28 |
GTATGCC | 585 | 0.0 | 21.543058 | 45 |
TCGTATG | 575 | 0.0 | 21.526335 | 43 |
CCGAGAC | 575 | 0.0 | 21.51949 | 25 |
ATCTCGT | 595 | 0.0 | 20.797468 | 40 |
GACCGAG | 585 | 0.0 | 20.768381 | 29 |
TTCCGAT | 55 | 0.0039378325 | 20.452408 | 20 |