FastQCFastQC Report
Mon 6 Jun 2016
ERR1378504.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378504.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences786276
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC22050.2804358774781374Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCCGTC19880.25283742604378107Illumina Paired End PCR Primer 2 (96% over 31bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT9680.12311198612192156Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2250.038.00811443
TGCCGTC2400.035.63260345
ATGCCGT2450.034.90540744
ACCGCTC300.00514891329.99686413
ACTAACG300.00514891329.99686411
CTCGTAT5350.023.55193542
CGAGTAA5300.023.348132
CGGAAGA5350.023.149031
GAGACCG5250.023.1419127
TCTCGTA5400.022.91718541
ACCGAGT5400.022.91572830
TATCTCG5450.022.7054939
CGTATGC5650.021.90733144
AGACCGA5550.021.89099528
GTATGCC5850.021.54305845
TCGTATG5750.021.52633543
CCGAGAC5750.021.5194925
ATCTCGT5950.020.79746840
GACCGAG5850.020.76838129
TTCCGAT550.003937832520.45240820