Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378502.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 840117 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCC | 4447 | 0.5293310336536459 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCCGTC | 4228 | 0.5032632359540397 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1714 | 0.20401920208732832 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 455 | 0.0 | 38.08433 | 43 |
TGCCGTC | 465 | 0.0 | 37.74928 | 45 |
ATGCCGT | 520 | 0.0 | 33.75656 | 44 |
AGATCGG | 295 | 0.0 | 26.69057 | 25 |
ATCGGAA | 305 | 0.0 | 25.07938 | 27 |
GATCGGA | 315 | 0.0 | 24.281763 | 26 |
CGGAAGA | 870 | 0.0 | 24.0736 | 1 |
GTATGCC | 945 | 0.0 | 21.909021 | 45 |
TCGGAAG | 375 | 0.0 | 21.599056 | 28 |
TATCTCG | 970 | 0.0 | 21.339275 | 39 |
CTCGTAT | 990 | 0.0 | 21.137957 | 42 |
ACCGAAC | 990 | 0.0 | 21.1367 | 30 |
TCTCGTA | 985 | 0.0 | 21.016811 | 41 |
CGTATGC | 995 | 0.0 | 20.808065 | 44 |
GACCGAA | 995 | 0.0 | 20.80435 | 29 |
ATCTCGT | 995 | 0.0 | 20.803112 | 40 |
CGAACAA | 1000 | 0.0 | 20.700327 | 32 |
TCGTATG | 1005 | 0.0 | 20.601023 | 43 |
CCGAACA | 1005 | 0.0 | 20.597342 | 31 |
GAGACCG | 1005 | 0.0 | 20.59489 | 27 |