FastQCFastQC Report
Mon 6 Jun 2016
ERR1378502.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378502.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences840117
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCC44470.5293310336536459Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCCGTC42280.5032632359540397Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT17140.20401920208732832Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4550.038.0843343
TGCCGTC4650.037.7492845
ATGCCGT5200.033.7565644
AGATCGG2950.026.6905725
ATCGGAA3050.025.0793827
GATCGGA3150.024.28176326
CGGAAGA8700.024.07361
GTATGCC9450.021.90902145
TCGGAAG3750.021.59905628
TATCTCG9700.021.33927539
CTCGTAT9900.021.13795742
ACCGAAC9900.021.136730
TCTCGTA9850.021.01681141
CGTATGC9950.020.80806544
GACCGAA9950.020.8043529
ATCTCGT9950.020.80311240
CGAACAA10000.020.70032732
TCGTATG10050.020.60102343
CCGAACA10050.020.59734231
GAGACCG10050.020.5948927