Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378501.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 831425 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCCGTC | 2885 | 0.34699461767447454 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 2671 | 0.3212556754968879 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1440 | 0.1731966202603963 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 255 | 0.0 | 34.421104 | 43 |
TGCCGTC | 275 | 0.0 | 31.91775 | 45 |
ATGCCGT | 305 | 0.0 | 28.7783 | 44 |
GATCGGA | 275 | 0.0 | 26.179472 | 26 |
ATCGGAA | 280 | 0.0 | 25.711985 | 27 |
TCGGAAG | 305 | 0.0 | 25.07972 | 28 |
AGATCGG | 310 | 0.0 | 23.94947 | 25 |
ACCGAGT | 560 | 0.0 | 23.301485 | 30 |
CTCGTAT | 560 | 0.0 | 22.908 | 42 |
CGAGTGT | 560 | 0.0 | 22.899736 | 32 |
CCGAGTG | 580 | 0.0 | 22.497986 | 31 |
AGACCGA | 570 | 0.0 | 22.497984 | 28 |
CGTATGC | 575 | 0.0 | 22.3104 | 44 |
TCGTATG | 575 | 0.0 | 22.3104 | 43 |
TCTCGTA | 575 | 0.0 | 22.307716 | 41 |
CGGAAGA | 615 | 0.0 | 21.604221 | 1 |
GAGACCG | 600 | 0.0 | 21.373087 | 27 |
GACCGAG | 615 | 0.0 | 21.217611 | 29 |
ATCTCGT | 610 | 0.0 | 21.022707 | 40 |
GTATGCC | 660 | 0.0 | 19.437094 | 45 |