FastQCFastQC Report
Mon 6 Jun 2016
ERR1378501.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378501.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences831425
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCCGTC28850.34699461767447454Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC26710.3212556754968879Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT14400.1731966202603963Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2550.034.42110443
TGCCGTC2750.031.9177545
ATGCCGT3050.028.778344
GATCGGA2750.026.17947226
ATCGGAA2800.025.71198527
TCGGAAG3050.025.0797228
AGATCGG3100.023.9494725
ACCGAGT5600.023.30148530
CTCGTAT5600.022.90842
CGAGTGT5600.022.89973632
CCGAGTG5800.022.49798631
AGACCGA5700.022.49798428
CGTATGC5750.022.310444
TCGTATG5750.022.310443
TCTCGTA5750.022.30771641
CGGAAGA6150.021.6042211
GAGACCG6000.021.37308727
GACCGAG6150.021.21761129
ATCTCGT6100.021.02270740
GTATGCC6600.019.43709445