Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378497.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1191069 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCCGTC | 3592 | 0.30157782630561286 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCC | 2548 | 0.2139254736711307 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1664 | 0.1397064317852282 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 435 | 0.0 | 37.249336 | 43 |
TGCCGTC | 485 | 0.0 | 33.4092 | 45 |
ATGCCGT | 495 | 0.0 | 32.734264 | 44 |
CTCGTAT | 665 | 0.0 | 24.019623 | 39 |
TCGGAAG | 320 | 0.0 | 23.905336 | 28 |
TCTCGTA | 670 | 0.0 | 23.840372 | 38 |
CGTATGC | 680 | 0.0 | 23.491749 | 41 |
AGACCGA | 695 | 0.0 | 23.306503 | 25 |
TCGTATG | 695 | 0.0 | 22.982801 | 40 |
ATCTCGT | 710 | 0.0 | 22.49725 | 37 |
GAGACCG | 725 | 0.0 | 22.342096 | 24 |
AATGCCG | 1100 | 0.0 | 22.08821 | 18 |
GACCGAG | 735 | 0.0 | 22.038122 | 26 |
ATGCCGA | 1095 | 0.0 | 21.983614 | 19 |
ACCGAGA | 740 | 0.0 | 21.891054 | 27 |
ATCGGAA | 310 | 0.0 | 21.773361 | 27 |
AAGAGCG | 1165 | 0.0 | 21.45947 | 1 |
AGAGCGG | 1155 | 0.0 | 21.244549 | 2 |
GTATGCC | 765 | 0.0 | 21.175663 | 42 |
GAGCGGT | 1160 | 0.0 | 21.14676 | 3 |