Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378496.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 647562 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCCGTC | 4463 | 0.6892004163307915 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCC | 3061 | 0.47269605072564486 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2016 | 0.3113215414122509 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 884 | 0.13651202510338778 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGCCGT | 515 | 0.0 | 38.01989 | 44 |
TATGCCG | 520 | 0.0 | 37.65431 | 43 |
TGCCGTC | 520 | 0.0 | 37.65431 | 45 |
GACCGGT | 795 | 0.0 | 24.619726 | 26 |
ACCGGTG | 800 | 0.0 | 24.465853 | 27 |
AGACCGG | 825 | 0.0 | 23.724463 | 25 |
CTCGTAT | 830 | 0.0 | 23.581545 | 39 |
CCGGTGA | 835 | 0.0 | 23.442148 | 28 |
TCTCGTA | 835 | 0.0 | 23.440338 | 38 |
CGGTGAT | 840 | 0.0 | 23.302612 | 29 |
CGTATGC | 845 | 0.0 | 23.166515 | 41 |
GAGACCG | 845 | 0.0 | 23.162937 | 24 |
TCGTATG | 845 | 0.0 | 23.162937 | 40 |
ATCTCGT | 855 | 0.0 | 22.892025 | 37 |
GTATGCC | 865 | 0.0 | 22.630875 | 42 |
ATCGGAA | 385 | 0.0 | 22.205162 | 27 |
CGAGACC | 885 | 0.0 | 22.116026 | 23 |
TCGGAAG | 420 | 0.0 | 21.96338 | 28 |
ATGCCGA | 1305 | 0.0 | 21.893959 | 19 |
TGCCGAG | 1330 | 0.0 | 21.48242 | 20 |