FastQCFastQC Report
Mon 6 Jun 2016
ERR1378496.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378496.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences647562
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCCGTC44630.6892004163307915Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCC30610.47269605072564486Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT20160.3113215414122509Illumina Paired End PCR Primer 2 (96% over 30bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8840.13651202510338778Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT5150.038.0198944
TATGCCG5200.037.6543143
TGCCGTC5200.037.6543145
GACCGGT7950.024.61972626
ACCGGTG8000.024.46585327
AGACCGG8250.023.72446325
CTCGTAT8300.023.58154539
CCGGTGA8350.023.44214828
TCTCGTA8350.023.44033838
CGGTGAT8400.023.30261229
CGTATGC8450.023.16651541
GAGACCG8450.023.16293724
TCGTATG8450.023.16293740
ATCTCGT8550.022.89202537
GTATGCC8650.022.63087542
ATCGGAA3850.022.20516227
CGAGACC8850.022.11602623
TCGGAAG4200.021.9633828
ATGCCGA13050.021.89395919
TGCCGAG13300.021.4824220