FastQCFastQC Report
Mon 6 Jun 2016
ERR1378491.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378491.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences789261
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCCGTC43800.554949503396215Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC39560.5012283642546635Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT21110.26746538850899765Illumina Paired End PCR Primer 2 (96% over 30bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC9540.12087256306849066Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC5250.036.8652945
TATGCCG5450.035.51243643
ATGCCGT5450.035.51243644
CGAATCT8950.021.61804234
GTACGAA8900.021.48670631
CCGGTAC8850.021.35388828
CGGTACG8850.021.35388829
GGTACGA9000.021.24796730
GTATGCC9250.021.16415842
CTCGTAT9150.021.14685639
TACGAAT9050.021.13057332
ACCGGTA8950.021.11529727
GATCGGA4050.021.1090926
GACCGGT9200.021.03059426
ACGAATC9200.021.03059433
TCTCGTA9250.020.91824238
AGATCGG4100.020.85166225
ATCGGAA4100.020.85166227
CGTATGC9350.020.69713841
AGACCGG9250.020.67369725