Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378491.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 789261 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCCGTC | 4380 | 0.554949503396215 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC | 3956 | 0.5012283642546635 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2111 | 0.26746538850899765 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 954 | 0.12087256306849066 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 525 | 0.0 | 36.86529 | 45 |
TATGCCG | 545 | 0.0 | 35.512436 | 43 |
ATGCCGT | 545 | 0.0 | 35.512436 | 44 |
CGAATCT | 895 | 0.0 | 21.618042 | 34 |
GTACGAA | 890 | 0.0 | 21.486706 | 31 |
CCGGTAC | 885 | 0.0 | 21.353888 | 28 |
CGGTACG | 885 | 0.0 | 21.353888 | 29 |
GGTACGA | 900 | 0.0 | 21.247967 | 30 |
GTATGCC | 925 | 0.0 | 21.164158 | 42 |
CTCGTAT | 915 | 0.0 | 21.146856 | 39 |
TACGAAT | 905 | 0.0 | 21.130573 | 32 |
ACCGGTA | 895 | 0.0 | 21.115297 | 27 |
GATCGGA | 405 | 0.0 | 21.10909 | 26 |
GACCGGT | 920 | 0.0 | 21.030594 | 26 |
ACGAATC | 920 | 0.0 | 21.030594 | 33 |
TCTCGTA | 925 | 0.0 | 20.918242 | 38 |
AGATCGG | 410 | 0.0 | 20.851662 | 25 |
ATCGGAA | 410 | 0.0 | 20.851662 | 27 |
CGTATGC | 935 | 0.0 | 20.697138 | 41 |
AGACCGG | 925 | 0.0 | 20.673697 | 25 |