Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378489.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 806754 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCCGTC | 3246 | 0.4023531336689995 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC | 2257 | 0.27976310002801347 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1682 | 0.20848982465534724 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 385 | 0.0 | 39.744366 | 43 |
ATGCCGT | 405 | 0.0 | 37.78168 | 44 |
TGCCGTC | 455 | 0.0 | 33.62985 | 45 |
CCAAACG | 50 | 7.1628456E-5 | 26.996096 | 20 |
ACCGAGT | 605 | 0.0 | 24.916842 | 27 |
CGTATGC | 615 | 0.0 | 24.877535 | 41 |
TCTCGTA | 615 | 0.0 | 24.875994 | 38 |
TCGTATG | 615 | 0.0 | 24.875994 | 40 |
AGACCGA | 615 | 0.0 | 24.87445 | 25 |
CTCGTAT | 620 | 0.0 | 24.67538 | 39 |
GAGACCG | 640 | 0.0 | 24.254305 | 24 |
GACCGAG | 640 | 0.0 | 23.904276 | 26 |
ATCGGAA | 285 | 0.0 | 23.68372 | 27 |
TCGGAAG | 290 | 0.0 | 23.275381 | 28 |
GATCGGA | 300 | 0.0 | 23.24808 | 26 |
ATCTCGT | 650 | 0.0 | 23.19039 | 37 |
AATGCCG | 985 | 0.0 | 22.839334 | 18 |
CCGAGTA | 670 | 0.0 | 22.499537 | 28 |
CGAGTAG | 675 | 0.0 | 22.332872 | 29 |
CATCTCG | 675 | 0.0 | 22.331488 | 36 |