FastQCFastQC Report
Mon 6 Jun 2016
ERR1378478.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378478.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1059087
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCCGTC34090.3218810163848673Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC20520.1937517880967286Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT19020.17958864569199698Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4550.037.09071443
TGCCGTC4750.036.4781645
ATGCCGT4700.036.38744744
AGACCGC6750.025.32926825
CGCAGAC6900.024.78213929
TCTCGTA6900.024.45605938
TCGTATG6950.024.28011740
ACCGCAG6950.024.27782227
CGTATGC7000.024.10782641
CTCGTAT7000.024.10668839
GACCGCA7100.023.7637926
CCGCAGA7200.023.43595128
ATCGGAA2500.023.39734827
ATCTCGT7350.023.26486637
GAGACCG7300.022.80455824
AATGCCG10100.022.27365318
AGCGGTT10250.022.1797394
GCGGTTC10450.021.7552455
CGGTTCA10400.021.6434046
GTATGCC7800.021.63318642