Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378472.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1328152 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCCGTC | 3528 | 0.26563224691149806 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 2107 | 0.1586414807943669 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1941 | 0.14614291135351978 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 445 | 0.0 | 35.401997 | 43 |
ATGCCGT | 455 | 0.0 | 34.129303 | 44 |
TGCCGTC | 465 | 0.0 | 33.87933 | 45 |
ATCGGAA | 425 | 0.0 | 24.881 | 27 |
TCGGAAG | 440 | 0.0 | 24.54412 | 28 |
CGCATGA | 660 | 0.0 | 23.521448 | 29 |
AGACCGC | 685 | 0.0 | 22.989717 | 25 |
AGATCGG | 460 | 0.0 | 22.986149 | 25 |
CGTATGC | 700 | 0.0 | 22.823626 | 41 |
GATCGGA | 475 | 0.0 | 22.734749 | 26 |
AATGCCG | 1165 | 0.0 | 22.593637 | 18 |
CTCGTAT | 720 | 0.0 | 22.186293 | 39 |
TCGTATG | 710 | 0.0 | 22.181892 | 40 |
TCTCGTA | 710 | 0.0 | 22.181057 | 38 |
ACCGCAT | 700 | 0.0 | 22.177364 | 27 |
GAGACCG | 715 | 0.0 | 22.025114 | 24 |
GACCGCA | 710 | 0.0 | 21.864185 | 26 |
ATGCCGA | 1215 | 0.0 | 21.663858 | 19 |
CCGCATG | 725 | 0.0 | 21.412628 | 28 |
GTATGCC | 740 | 0.0 | 21.286634 | 42 |