FastQCFastQC Report
Mon 6 Jun 2016
ERR1378472.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378472.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1328152
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCCGTC35280.26563224691149806Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC21070.1586414807943669Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT19410.14614291135351978Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4450.035.40199743
ATGCCGT4550.034.12930344
TGCCGTC4650.033.8793345
ATCGGAA4250.024.88127
TCGGAAG4400.024.5441228
CGCATGA6600.023.52144829
AGACCGC6850.022.98971725
AGATCGG4600.022.98614925
CGTATGC7000.022.82362641
GATCGGA4750.022.73474926
AATGCCG11650.022.59363718
CTCGTAT7200.022.18629339
TCGTATG7100.022.18189240
TCTCGTA7100.022.18105738
ACCGCAT7000.022.17736427
GAGACCG7150.022.02511424
GACCGCA7100.021.86418526
ATGCCGA12150.021.66385819
CCGCATG7250.021.41262828
GTATGCC7400.021.28663442