FastQCFastQC Report
Mon 6 Jun 2016
ERR1378470.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378470.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences959732
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCCGTC52050.5423389029437384Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCC35560.3705201035289018Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT24930.25976001633789436Illumina Paired End PCR Primer 2 (96% over 30bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC11550.12034609661863936Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG7400.039.5381143
ATGCCGT7500.039.0109344
TGCCGTC7700.037.9976645
GTATGCC11300.025.88951142
CGTATGC11550.025.32781441
CTCGTAT11650.025.10517339
TCTCGTA11650.025.10517338
ATCTCGT11750.024.89151437
TCGTATG11850.024.68145640
ACCGTGA11800.024.59409927
GAGACCG12100.024.54210324
GACCGTG11850.024.49032426
CGTGAGA12000.024.3716729
AGACCGT12000.024.18419525
CCGTGAG12050.024.08384528
CATCTCG12150.024.07203936
AATGCCG17250.022.95338618
CCGAGAC13050.022.4107322
ATGCCGA17800.022.24415219
TGCCGAG17850.022.18184320