Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378470.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 959732 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCCGTC | 5205 | 0.5423389029437384 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCC | 3556 | 0.3705201035289018 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2493 | 0.25976001633789436 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1155 | 0.12034609661863936 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 740 | 0.0 | 39.53811 | 43 |
ATGCCGT | 750 | 0.0 | 39.01093 | 44 |
TGCCGTC | 770 | 0.0 | 37.99766 | 45 |
GTATGCC | 1130 | 0.0 | 25.889511 | 42 |
CGTATGC | 1155 | 0.0 | 25.327814 | 41 |
CTCGTAT | 1165 | 0.0 | 25.105173 | 39 |
TCTCGTA | 1165 | 0.0 | 25.105173 | 38 |
ATCTCGT | 1175 | 0.0 | 24.891514 | 37 |
TCGTATG | 1185 | 0.0 | 24.681456 | 40 |
ACCGTGA | 1180 | 0.0 | 24.594099 | 27 |
GAGACCG | 1210 | 0.0 | 24.542103 | 24 |
GACCGTG | 1185 | 0.0 | 24.490324 | 26 |
CGTGAGA | 1200 | 0.0 | 24.37167 | 29 |
AGACCGT | 1200 | 0.0 | 24.184195 | 25 |
CCGTGAG | 1205 | 0.0 | 24.083845 | 28 |
CATCTCG | 1215 | 0.0 | 24.072039 | 36 |
AATGCCG | 1725 | 0.0 | 22.953386 | 18 |
CCGAGAC | 1305 | 0.0 | 22.41073 | 22 |
ATGCCGA | 1780 | 0.0 | 22.244152 | 19 |
TGCCGAG | 1785 | 0.0 | 22.181843 | 20 |