FastQCFastQC Report
Mon 6 Jun 2016
ERR1378467.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378467.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences726792
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC16100.22152142566236283Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC14560.20033241972944116Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1900.035.52816443
ATGCCGT2300.031.30597544
TGCCGTC2300.031.30597545
CCACGGA500.002260417222.5058163
GATCGGA1358.367351E-1121.6648126
AGATCGG1452.1827873E-1020.17068525
CGGTTCA5150.019.6652766
TCTCGTA3550.019.64620638
TCGGAAG1503.43789E-1019.49833128
CTCGTAT3500.019.28406339
AGCGGTT5400.019.171624
AATGCCG5400.019.16502618
CGTATGC3550.019.01376541
TCGTATG3550.019.01376540
CGGAAGA3450.018.927051
ATCGGAA1555.329639E-1018.86935227
GCGGTTC5400.018.7548455
GAGCGGT5400.018.7548453
TGCCGAG5300.018.67764720
AAGAGCG5450.018.591741