Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378467.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 726792 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC | 1610 | 0.22152142566236283 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1456 | 0.20033241972944116 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 190 | 0.0 | 35.528164 | 43 |
ATGCCGT | 230 | 0.0 | 31.305975 | 44 |
TGCCGTC | 230 | 0.0 | 31.305975 | 45 |
CCACGGA | 50 | 0.0022604172 | 22.505816 | 3 |
GATCGGA | 135 | 8.367351E-11 | 21.66481 | 26 |
AGATCGG | 145 | 2.1827873E-10 | 20.170685 | 25 |
CGGTTCA | 515 | 0.0 | 19.665276 | 6 |
TCTCGTA | 355 | 0.0 | 19.646206 | 38 |
TCGGAAG | 150 | 3.43789E-10 | 19.498331 | 28 |
CTCGTAT | 350 | 0.0 | 19.284063 | 39 |
AGCGGTT | 540 | 0.0 | 19.17162 | 4 |
AATGCCG | 540 | 0.0 | 19.165026 | 18 |
CGTATGC | 355 | 0.0 | 19.013765 | 41 |
TCGTATG | 355 | 0.0 | 19.013765 | 40 |
CGGAAGA | 345 | 0.0 | 18.92705 | 1 |
ATCGGAA | 155 | 5.329639E-10 | 18.869352 | 27 |
GCGGTTC | 540 | 0.0 | 18.754845 | 5 |
GAGCGGT | 540 | 0.0 | 18.754845 | 3 |
TGCCGAG | 530 | 0.0 | 18.677647 | 20 |
AAGAGCG | 545 | 0.0 | 18.59174 | 1 |