Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378459.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 818154 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC | 2342 | 0.2862541770864654 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCCGTC | 2062 | 0.25203079126912536 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1038 | 0.1268709802799962 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 270 | 0.0 | 36.666813 | 43 |
CGAACCG | 25 | 0.0021073443 | 35.997944 | 24 |
ATGCCGT | 310 | 0.0 | 31.935614 | 44 |
TGCCGTC | 310 | 0.0 | 31.935614 | 45 |
GATCGGA | 240 | 0.0 | 24.37361 | 26 |
ATCGGAA | 245 | 0.0 | 23.876186 | 27 |
CGGAAGA | 550 | 0.0 | 22.511097 | 1 |
CGTATGC | 560 | 0.0 | 22.098305 | 44 |
TCGGAAG | 280 | 0.0 | 21.69519 | 28 |
AGACCGT | 585 | 0.0 | 21.537231 | 28 |
CTCGTAT | 575 | 0.0 | 21.521828 | 42 |
TCGTATG | 580 | 0.0 | 21.336294 | 43 |
AGATCGG | 285 | 0.0 | 21.314571 | 25 |
TATCTCG | 585 | 0.0 | 21.153933 | 39 |
TCTCGTA | 590 | 0.0 | 20.975945 | 41 |
CCGTCAT | 590 | 0.0 | 20.973381 | 31 |
ATCTCGT | 595 | 0.0 | 20.798403 | 40 |
GACCGTC | 610 | 0.0 | 20.65456 | 29 |
CGTCATG | 610 | 0.0 | 20.65456 | 32 |
GAGACCG | 600 | 0.0 | 20.623823 | 27 |