Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378455.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 998968 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC | 2687 | 0.26897758486758333 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCCGTC | 2580 | 0.258266531060054 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1491 | 0.1492540301591242 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 335 | 0.0 | 36.27039 | 43 |
ATGCCGT | 360 | 0.0 | 33.751614 | 44 |
TGCCGTC | 375 | 0.0 | 31.801523 | 45 |
AGATCGG | 315 | 0.0 | 25.710367 | 25 |
ATCGGAA | 330 | 0.0 | 24.542942 | 27 |
GATCGGA | 330 | 0.0 | 24.541714 | 26 |
TCGGAAG | 420 | 0.0 | 21.962038 | 28 |
CGTATGC | 655 | 0.0 | 20.9552 | 44 |
CCGCTAT | 665 | 0.0 | 20.636986 | 31 |
TCGTATG | 675 | 0.0 | 20.334307 | 43 |
CTCGTAT | 675 | 0.0 | 20.333288 | 42 |
CGCTATC | 675 | 0.0 | 20.331253 | 32 |
ATCTCGT | 680 | 0.0 | 20.181759 | 40 |
ACCGCTA | 685 | 0.0 | 20.034445 | 30 |
AATGCCG | 1080 | 0.0 | 19.996952 | 18 |
TCTCGTA | 690 | 0.0 | 19.88927 | 41 |
AATCTCG | 690 | 0.0 | 19.88927 | 39 |
GTATGCC | 695 | 0.0 | 19.749147 | 45 |
GAGACCG | 695 | 0.0 | 19.422472 | 27 |
ATGCCGA | 1155 | 0.0 | 19.088 | 19 |