FastQCFastQC Report
Mon 6 Jun 2016
ERR1378455.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378455.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences998968
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC26870.26897758486758333Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCCGTC25800.258266531060054Illumina Paired End PCR Primer 2 (96% over 32bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT14910.1492540301591242Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3350.036.2703943
ATGCCGT3600.033.75161444
TGCCGTC3750.031.80152345
AGATCGG3150.025.71036725
ATCGGAA3300.024.54294227
GATCGGA3300.024.54171426
TCGGAAG4200.021.96203828
CGTATGC6550.020.955244
CCGCTAT6650.020.63698631
TCGTATG6750.020.33430743
CTCGTAT6750.020.33328842
CGCTATC6750.020.33125332
ATCTCGT6800.020.18175940
ACCGCTA6850.020.03444530
AATGCCG10800.019.99695218
TCTCGTA6900.019.8892741
AATCTCG6900.019.8892739
GTATGCC6950.019.74914745
GAGACCG6950.019.42247227
ATGCCGA11550.019.08819