FastQCFastQC Report
Mon 6 Jun 2016
ERR1378447.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378447.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences875516
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCCGTC20850.2381452766140196Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCC20750.23700309303313705Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT11990.1369478113478223Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2400.036.5675643
ATGCCGT2650.033.1177944
TGCCGTC2950.029.7498845
ATCGGAA2200.027.61114727
GATCGGA2300.025.43249126
CGGAAGA5550.025.164491
TCGGAAG2450.024.79368228
CGTATGC5400.024.1700144
CGCTACA5400.024.16448832
ACCGCTA5550.023.51139530
CTCGTAT5650.023.49882742
AGATCGG2500.023.39655525
TCGTATG5700.023.29269643
TATCTCG5700.022.89267339
TCTCGTA5750.022.69619841
CCGCTAC5750.022.69360731
GACCGCT5800.022.49797229
GAGACCG6000.021.7480427
AGACCGC6000.021.7480428
ATCTCGT6050.021.56830440