Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378447.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 875516 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCCGTC | 2085 | 0.2381452766140196 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCC | 2075 | 0.23700309303313705 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1199 | 0.1369478113478223 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 240 | 0.0 | 36.56756 | 43 |
ATGCCGT | 265 | 0.0 | 33.11779 | 44 |
TGCCGTC | 295 | 0.0 | 29.74988 | 45 |
ATCGGAA | 220 | 0.0 | 27.611147 | 27 |
GATCGGA | 230 | 0.0 | 25.432491 | 26 |
CGGAAGA | 555 | 0.0 | 25.16449 | 1 |
TCGGAAG | 245 | 0.0 | 24.793682 | 28 |
CGTATGC | 540 | 0.0 | 24.17001 | 44 |
CGCTACA | 540 | 0.0 | 24.164488 | 32 |
ACCGCTA | 555 | 0.0 | 23.511395 | 30 |
CTCGTAT | 565 | 0.0 | 23.498827 | 42 |
AGATCGG | 250 | 0.0 | 23.396555 | 25 |
TCGTATG | 570 | 0.0 | 23.292696 | 43 |
TATCTCG | 570 | 0.0 | 22.892673 | 39 |
TCTCGTA | 575 | 0.0 | 22.696198 | 41 |
CCGCTAC | 575 | 0.0 | 22.693607 | 31 |
GACCGCT | 580 | 0.0 | 22.497972 | 29 |
GAGACCG | 600 | 0.0 | 21.74804 | 27 |
AGACCGC | 600 | 0.0 | 21.74804 | 28 |
ATCTCGT | 605 | 0.0 | 21.568304 | 40 |