FastQCFastQC Report
Mon 6 Jun 2016
ERR1378439.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378439.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1503403
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGGTT654.2377575E-420.7701827
CGTATGC654.2396606E-420.768844
GCGGTTC654.2396606E-420.76888
CTCGTAT706.985813E-419.28531542
GACCGGC706.985813E-419.28531529
CGGCTAA1853.074092E-1017.02610817
ATGCCGA800.001711794216.87408822
ACCCGGC1358.59156E-716.6657714
GAGCGGT850.002563735715.8841376
TCTCGTA850.002566012615.88202541
CCGAGAC1209.759821E-514.99919125
ACGGGAT1705.894708E-714.55803813
ACCGGCA950.005377771314.21023330
AGACCGG950.005377771314.21023328
ATGACGA950.00537895814.20975920
TCGTATG1000.007553472613.49972143
CCGGCTA1851.5294681E-613.37765716
CACCCGG1555.8150552E-513.06381113
CGTTGGA3001.2732926E-1012.7514325
CGGGATT1801.695013E-512.49932614
Produced by FastQC (version 0.11.5)