FastQCFastQC Report
Mon 6 Jun 2016
ERR1378437.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378437.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences836057
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC551.126773E-732.7283178
CCGGGTA602.4182373E-729.9991631
CGTATGC602.4182373E-729.9991644
TCCGACT300.00514716929.9991612
AGACCGG602.4182373E-729.9991628
CGGGTAA654.8719085E-727.69153632
ACCGGGT654.8719085E-727.69153630
GACCGGG654.8719085E-727.69153629
CTCGTAT709.304713E-725.71356842
AGCGGTT751.6953709E-624.0022017
TCTCGTA751.6971371E-623.9993341
TCGTATG851.8928768E-723.82286643
AGAGCGG802.970779E-622.5020645
GAGACCG802.9738658E-622.4993727
CGGAAGA955.5136115E-721.321571
CCGAGAC955.5294913E-721.31519325
GAGCGGT855.0255057E-621.1784136
CATCTCG855.0307153E-621.1758839
GTATGCC855.0307153E-621.1758845
ATCTCGT908.248819E-619.99944340