Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378437.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 836057 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 55 | 1.126773E-7 | 32.728317 | 8 |
CCGGGTA | 60 | 2.4182373E-7 | 29.99916 | 31 |
CGTATGC | 60 | 2.4182373E-7 | 29.99916 | 44 |
TCCGACT | 30 | 0.005147169 | 29.99916 | 12 |
AGACCGG | 60 | 2.4182373E-7 | 29.99916 | 28 |
CGGGTAA | 65 | 4.8719085E-7 | 27.691536 | 32 |
ACCGGGT | 65 | 4.8719085E-7 | 27.691536 | 30 |
GACCGGG | 65 | 4.8719085E-7 | 27.691536 | 29 |
CTCGTAT | 70 | 9.304713E-7 | 25.713568 | 42 |
AGCGGTT | 75 | 1.6953709E-6 | 24.002201 | 7 |
TCTCGTA | 75 | 1.6971371E-6 | 23.99933 | 41 |
TCGTATG | 85 | 1.8928768E-7 | 23.822866 | 43 |
AGAGCGG | 80 | 2.970779E-6 | 22.502064 | 5 |
GAGACCG | 80 | 2.9738658E-6 | 22.49937 | 27 |
CGGAAGA | 95 | 5.5136115E-7 | 21.32157 | 1 |
CCGAGAC | 95 | 5.5294913E-7 | 21.315193 | 25 |
GAGCGGT | 85 | 5.0255057E-6 | 21.178413 | 6 |
CATCTCG | 85 | 5.0307153E-6 | 21.17588 | 39 |
GTATGCC | 85 | 5.0307153E-6 | 21.17588 | 45 |
ATCTCGT | 90 | 8.248819E-6 | 19.999443 | 40 |