FastQCFastQC Report
Mon 6 Jun 2016
ERR1378436.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378436.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences886340
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1050.034.28425244
CTCGTAT1050.034.28425242
TCTCGTA1000.033.7485641
AGACCGG1100.032.7258828
CATTCGC300.00513918930.0088792
GAGCGGT1200.030.0054916
GCGGTTC1200.030.0021088
TCGCAAA300.005147703529.998729
GACCGGC1200.029.9987229
TCGTATG1200.029.9987243
ATCTCGT1150.029.34657540
AGCGGTT1350.028.3385187
AGAGCGG1400.025.7189925
AATGCCG1400.025.71319221
CCGCCAC801.0513577E-725.3171354
ACCGGCT1450.024.82652730
ATGCCGA1500.023.99897622
TGCCGAG1500.023.99897623
GAGACCG1550.023.22481727
CGGTTCA1650.023.180839