Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378436.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 886340 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 105 | 0.0 | 34.284252 | 44 |
CTCGTAT | 105 | 0.0 | 34.284252 | 42 |
TCTCGTA | 100 | 0.0 | 33.74856 | 41 |
AGACCGG | 110 | 0.0 | 32.72588 | 28 |
CATTCGC | 30 | 0.005139189 | 30.008879 | 2 |
GAGCGGT | 120 | 0.0 | 30.005491 | 6 |
GCGGTTC | 120 | 0.0 | 30.002108 | 8 |
TCGCAAA | 30 | 0.0051477035 | 29.99872 | 9 |
GACCGGC | 120 | 0.0 | 29.99872 | 29 |
TCGTATG | 120 | 0.0 | 29.99872 | 43 |
ATCTCGT | 115 | 0.0 | 29.346575 | 40 |
AGCGGTT | 135 | 0.0 | 28.338518 | 7 |
AGAGCGG | 140 | 0.0 | 25.718992 | 5 |
AATGCCG | 140 | 0.0 | 25.713192 | 21 |
CCGCCAC | 80 | 1.0513577E-7 | 25.317135 | 4 |
ACCGGCT | 145 | 0.0 | 24.826527 | 30 |
ATGCCGA | 150 | 0.0 | 23.998976 | 22 |
TGCCGAG | 150 | 0.0 | 23.998976 | 23 |
GAGACCG | 155 | 0.0 | 23.224817 | 27 |
CGGTTCA | 165 | 0.0 | 23.18083 | 9 |