FastQCFastQC Report
Mon 6 Jun 2016
ERR1378435.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378435.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1022848
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG458.6943146E-735.0022435
GCGGTTC501.9811014E-631.5004798
TCGTATG554.163854E-628.63679943
CGGTTCA554.1654403E-628.6353999
CGTATGC551.3679176E-424.54582844
ATGCCGA551.3683716E-424.54462622
AGCGGTT651.5233587E-524.2311387
GACCGCT602.4678136E-422.49924329
CGGAAGA754.5962577E-521.00341
CTCGTAT654.2373568E-420.76954742
TCTCGTA654.2373568E-420.76954741
GAGCGGT807.558236E-519.688766
ACCGCTG706.984332E-419.28506530
CGTGAGC1555.329639E-1018.8740231
CCGCTGA750.001110360417.99939331
AGACCGC800.001711057316.87443228
CGCCACC1358.5743704E-716.6677365
CCGAGAC952.819698E-416.57838825
ATCTCGT850.00256464615.88259440
GGCGCGG1602.9566036E-715.4712534