Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378435.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1022848 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 45 | 8.6943146E-7 | 35.002243 | 5 |
GCGGTTC | 50 | 1.9811014E-6 | 31.500479 | 8 |
TCGTATG | 55 | 4.163854E-6 | 28.636799 | 43 |
CGGTTCA | 55 | 4.1654403E-6 | 28.635399 | 9 |
CGTATGC | 55 | 1.3679176E-4 | 24.545828 | 44 |
ATGCCGA | 55 | 1.3683716E-4 | 24.544626 | 22 |
AGCGGTT | 65 | 1.5233587E-5 | 24.231138 | 7 |
GACCGCT | 60 | 2.4678136E-4 | 22.499243 | 29 |
CGGAAGA | 75 | 4.5962577E-5 | 21.0034 | 1 |
CTCGTAT | 65 | 4.2373568E-4 | 20.769547 | 42 |
TCTCGTA | 65 | 4.2373568E-4 | 20.769547 | 41 |
GAGCGGT | 80 | 7.558236E-5 | 19.68876 | 6 |
ACCGCTG | 70 | 6.984332E-4 | 19.285065 | 30 |
CGTGAGC | 155 | 5.329639E-10 | 18.874023 | 1 |
CCGCTGA | 75 | 0.0011103604 | 17.999393 | 31 |
AGACCGC | 80 | 0.0017110573 | 16.874432 | 28 |
CGCCACC | 135 | 8.5743704E-7 | 16.667736 | 5 |
CCGAGAC | 95 | 2.819698E-4 | 16.578388 | 25 |
ATCTCGT | 85 | 0.002564646 | 15.882594 | 40 |
GGCGCGG | 160 | 2.9566036E-7 | 15.471253 | 4 |