FastQCFastQC Report
Mon 6 Jun 2016
ERR1378434.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378434.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences807025
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA401.5603317E-533.74892841
CGTATGC453.4903234E-529.9990544
TCGTATG453.4903234E-529.9990543
ATGCCGA453.4903234E-529.9990522
AGAGCGG507.151309E-527.0024915
CGGTTCA651.5233942E-524.2300019
AAGAGCG602.4630182E-422.5048664
GCGGTTC702.7023643E-522.4992898
CTCGTAT602.4671538E-422.49928742
AGACCGT602.4671538E-422.49928728
CGGAAGA754.5884073E-521.0071451
GAGCGGT654.2340867E-420.7711476
AATGCCG654.2376298E-420.76857221
TGCCGAG654.2376298E-420.76857223
GACCGTG706.9824886E-419.28510529
AGCGGTT750.001109608118.0005467
CCGAGAC750.001110069617.9994325
ATCTCGT800.001710611616.87446440
CCGTGGA800.001710611616.87446431
CGGAGCT800.001710611616.87446433
Produced by FastQC (version 0.11.5)