FastQCFastQC Report
Mon 6 Jun 2016
ERR1378428.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378428.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences853221
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCTAT556.184564E-1140.90658631
CGCTATT556.184564E-1140.90658632
CTCGTAT751.7007551E-930.00167842
ACCGCTA702.8861905E-828.926830
CGTATGC803.3905962E-928.12657744
TCGTATG856.4719643E-926.4720743
GACCGCT801.05375875E-725.31095129
GAGCGGT901.187982E-825.0043326
AGAGCGG952.1098458E-823.6883135
TCTCGTA1003.639434E-822.5012641
AGACCGC903.286823E-722.49862328
GCGGTTC1056.103437E-821.4285148
CCGAGAC955.531547E-721.31448625
CGGGATT955.531547E-721.31448614
AGCGGTT1109.976793E-820.4544937
CGGTTCA1109.9829776E-820.4532939
CGAGACC1109.9829776E-820.45329326
CGGAAGA1151.5902515E-719.5697541
AAGAGCG1151.5902515E-719.5697544
TGCCGAG1051.4455236E-619.28453423