Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378428.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 853221 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGCTAT | 55 | 6.184564E-11 | 40.906586 | 31 |
CGCTATT | 55 | 6.184564E-11 | 40.906586 | 32 |
CTCGTAT | 75 | 1.7007551E-9 | 30.001678 | 42 |
ACCGCTA | 70 | 2.8861905E-8 | 28.9268 | 30 |
CGTATGC | 80 | 3.3905962E-9 | 28.126577 | 44 |
TCGTATG | 85 | 6.4719643E-9 | 26.47207 | 43 |
GACCGCT | 80 | 1.05375875E-7 | 25.310951 | 29 |
GAGCGGT | 90 | 1.187982E-8 | 25.004332 | 6 |
AGAGCGG | 95 | 2.1098458E-8 | 23.688313 | 5 |
TCTCGTA | 100 | 3.639434E-8 | 22.50126 | 41 |
AGACCGC | 90 | 3.286823E-7 | 22.498623 | 28 |
GCGGTTC | 105 | 6.103437E-8 | 21.428514 | 8 |
CCGAGAC | 95 | 5.531547E-7 | 21.314486 | 25 |
CGGGATT | 95 | 5.531547E-7 | 21.314486 | 14 |
AGCGGTT | 110 | 9.976793E-8 | 20.454493 | 7 |
CGGTTCA | 110 | 9.9829776E-8 | 20.453293 | 9 |
CGAGACC | 110 | 9.9829776E-8 | 20.453293 | 26 |
CGGAAGA | 115 | 1.5902515E-7 | 19.569754 | 1 |
AAGAGCG | 115 | 1.5902515E-7 | 19.569754 | 4 |
TGCCGAG | 105 | 1.4455236E-6 | 19.284534 | 23 |