FastQCFastQC Report
Mon 6 Jun 2016
ERR1378426.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378426.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1073548
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCAATT651.4037141E-831.15297332
CGGGTCC300.005147813429.9991623
TCTCGTA702.8865543E-828.92776541
CTCGTAT654.874073E-727.69153242
AGACCGC654.874073E-727.69153228
TCGTATG709.308842E-725.71356843
CCGCAAT709.308842E-725.71356831
CGTATGC751.6978847E-623.9993344
AGCGGTT751.6978847E-623.999337
GCGGTTC802.9751718E-622.499378
ACCGCAA802.9751718E-622.4993730
GACCGCA855.0329163E-621.17587929
ATCTCGT951.3160166E-518.94683840
GAGACCG1002.046923E-517.99949627
AAGAGCG1153.4415007E-617.6123054
TGAGCCG1953.45608E-1117.30720945
CCGAGAC1053.11286E-517.14237825
CGGTTCA1104.638167E-516.3631789
CTTCGTT1552.0608422E-715.9710142
TCGTTGG1855.6024874E-915.8140534