FastQCFastQC Report
Mon 6 Jun 2016
ERR1378422.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378422.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1015796
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTACG403.458972E-739.3731531
TATCTCG501.981285E-631.50006739
GACCGTA554.165837E-628.63501529
CGTACGT554.165837E-628.63501532
ACGCCCG709.3095696E-725.71307812
CTCGTAT651.5240797E-524.22962842
CGTTATC702.7025464E-522.50005136
AGACCGT802.9754028E-622.49894328
CGGTTCA754.603625E-520.9990129
ACCGTAC754.603625E-520.99901230
AGAGCGG908.242529E-620.0020125
GAGACCG908.253057E-619.99905827
GAGCGGT807.556041E-519.6894846
CGCGCCC600.00651175618.74911711
ACGTTAT851.2042458E-418.52945335
TCGTATG851.2047003E-418.5285443
CGCCCGG1253.8340295E-717.99915313
ATCTCGT901.865377E-417.50003840
TCTCGTA901.8660794E-417.49917641
CACGCCC1701.8299033E-917.20507211