Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378422.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1015796 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTACG | 40 | 3.458972E-7 | 39.37315 | 31 |
TATCTCG | 50 | 1.981285E-6 | 31.500067 | 39 |
GACCGTA | 55 | 4.165837E-6 | 28.635015 | 29 |
CGTACGT | 55 | 4.165837E-6 | 28.635015 | 32 |
ACGCCCG | 70 | 9.3095696E-7 | 25.713078 | 12 |
CTCGTAT | 65 | 1.5240797E-5 | 24.229628 | 42 |
CGTTATC | 70 | 2.7025464E-5 | 22.500051 | 36 |
AGACCGT | 80 | 2.9754028E-6 | 22.498943 | 28 |
CGGTTCA | 75 | 4.603625E-5 | 20.999012 | 9 |
ACCGTAC | 75 | 4.603625E-5 | 20.999012 | 30 |
AGAGCGG | 90 | 8.242529E-6 | 20.002012 | 5 |
GAGACCG | 90 | 8.253057E-6 | 19.999058 | 27 |
GAGCGGT | 80 | 7.556041E-5 | 19.689484 | 6 |
CGCGCCC | 60 | 0.006511756 | 18.749117 | 11 |
ACGTTAT | 85 | 1.2042458E-4 | 18.529453 | 35 |
TCGTATG | 85 | 1.2047003E-4 | 18.52854 | 43 |
CGCCCGG | 125 | 3.8340295E-7 | 17.999153 | 13 |
ATCTCGT | 90 | 1.865377E-4 | 17.500038 | 40 |
TCTCGTA | 90 | 1.8660794E-4 | 17.499176 | 41 |
CACGCCC | 170 | 1.8299033E-9 | 17.205072 | 11 |