Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378421.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 744562 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 40 | 1.5600066E-5 | 33.749447 | 42 |
TCTCGTA | 40 | 1.5600066E-5 | 33.749447 | 41 |
CATCGGC | 30 | 0.0051465197 | 29.99951 | 17 |
GCGGTTC | 55 | 4.162879E-6 | 28.635895 | 8 |
GACCGTC | 50 | 7.1558694E-5 | 26.999556 | 29 |
AGACCGT | 50 | 7.1558694E-5 | 26.999556 | 28 |
TATCTCG | 55 | 1.3677227E-4 | 24.545052 | 39 |
ACCGTCA | 55 | 1.3677227E-4 | 24.545052 | 30 |
GAGCGGT | 75 | 1.6955582E-6 | 24.001219 | 6 |
CCTTCGT | 100 | 3.630339E-8 | 22.505676 | 1 |
CGTATGC | 60 | 2.46665E-4 | 22.499632 | 44 |
CGGTTCA | 95 | 5.5271994E-7 | 21.315441 | 9 |
AGAGCGG | 85 | 5.026068E-6 | 21.177546 | 5 |
CGGAAGA | 75 | 4.5909037E-5 | 21.005297 | 1 |
ACGGGAT | 75 | 4.6004185E-5 | 20.999657 | 13 |
AGCGGTT | 80 | 7.559383E-5 | 19.687178 | 7 |
ATCTCGT | 70 | 6.9810794E-4 | 19.285398 | 40 |
CCGAGAC | 85 | 1.2038691E-4 | 18.529108 | 25 |
CGTTGGA | 135 | 4.263711E-8 | 18.334263 | 5 |
TCGTATG | 75 | 0.0011098463 | 17.999704 | 43 |