FastQCFastQC Report
Mon 6 Jun 2016
ERR1378421.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378421.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences744562
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT401.5600066E-533.74944742
TCTCGTA401.5600066E-533.74944741
CATCGGC300.005146519729.9995117
GCGGTTC554.162879E-628.6358958
GACCGTC507.1558694E-526.99955629
AGACCGT507.1558694E-526.99955628
TATCTCG551.3677227E-424.54505239
ACCGTCA551.3677227E-424.54505230
GAGCGGT751.6955582E-624.0012196
CCTTCGT1003.630339E-822.5056761
CGTATGC602.46665E-422.49963244
CGGTTCA955.5271994E-721.3154419
AGAGCGG855.026068E-621.1775465
CGGAAGA754.5909037E-521.0052971
ACGGGAT754.6004185E-520.99965713
AGCGGTT807.559383E-519.6871787
ATCTCGT706.9810794E-419.28539840
CCGAGAC851.2038691E-418.52910825
CGTTGGA1354.263711E-818.3342635
TCGTATG750.001109846317.99970443