Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378419.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 972740 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 90 | 0.0 | 34.99924 | 44 |
CCGTTGC | 90 | 0.0 | 34.99924 | 31 |
CTCGTAT | 95 | 0.0 | 33.157173 | 42 |
TCTCGTA | 100 | 0.0 | 31.499317 | 41 |
GACCGTT | 110 | 0.0 | 28.63574 | 29 |
GAGACCG | 115 | 0.0 | 27.390713 | 27 |
AGACCGT | 115 | 0.0 | 27.390713 | 28 |
TCGTATG | 115 | 0.0 | 27.390713 | 43 |
GCGGTTC | 115 | 0.0 | 27.389303 | 8 |
AATCTCG | 125 | 0.0 | 26.998026 | 39 |
AGAGCGG | 125 | 1.8189894E-12 | 25.200748 | 5 |
ACCGTTG | 125 | 1.8189894E-12 | 25.199453 | 30 |
CGTTGCT | 130 | 1.8189894E-12 | 24.230244 | 32 |
CGGTTCA | 130 | 1.8189894E-12 | 24.228998 | 9 |
GAGCGGT | 135 | 3.6379788E-12 | 23.334028 | 6 |
AGCGGTT | 135 | 3.6379788E-12 | 23.332827 | 7 |
CCGGCTA | 110 | 4.0545274E-9 | 22.498354 | 16 |
CGGAAGA | 155 | 1.8189894E-12 | 21.790522 | 1 |
ATCTCGT | 145 | 9.094947E-12 | 21.72255 | 40 |
TGTGGCG | 55 | 0.003926067 | 20.463568 | 3 |