FastQCFastQC Report
Mon 6 Jun 2016
ERR1378419.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378419.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences972740
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC900.034.9992444
CCGTTGC900.034.9992431
CTCGTAT950.033.15717342
TCTCGTA1000.031.49931741
GACCGTT1100.028.6357429
GAGACCG1150.027.39071327
AGACCGT1150.027.39071328
TCGTATG1150.027.39071343
GCGGTTC1150.027.3893038
AATCTCG1250.026.99802639
AGAGCGG1251.8189894E-1225.2007485
ACCGTTG1251.8189894E-1225.19945330
CGTTGCT1301.8189894E-1224.23024432
CGGTTCA1301.8189894E-1224.2289989
GAGCGGT1353.6379788E-1223.3340286
AGCGGTT1353.6379788E-1223.3328277
CCGGCTA1104.0545274E-922.49835416
CGGAAGA1551.8189894E-1221.7905221
ATCTCGT1459.094947E-1221.7225540
TGTGGCG550.00392606720.4635683