Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378414.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1155349 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTTAT | 30 | 1.1401318E-4 | 37.498844 | 32 |
GACCGGT | 40 | 6.167274E-4 | 28.124134 | 29 |
ACCGGTT | 50 | 0.0022650217 | 22.499308 | 30 |
CCGGTTA | 50 | 0.0022650217 | 22.499308 | 31 |
ACCACGC | 220 | 0.0 | 19.431221 | 9 |
CGGTTCA | 75 | 0.0011104575 | 17.999445 | 9 |
CCACGCC | 250 | 0.0 | 17.099474 | 10 |
AGCGCTC | 120 | 5.172529E-6 | 16.875212 | 7 |
CACGCCC | 170 | 3.4067853E-8 | 15.881863 | 11 |
CGCTCCA | 160 | 2.9640432E-7 | 15.468274 | 9 |
CACCACG | 310 | 0.0 | 14.516311 | 8 |
GCGCTCC | 140 | 2.229722E-5 | 14.464467 | 8 |
GCGCGGT | 130 | 1.9252303E-4 | 13.846926 | 5 |
ATGCCCG | 115 | 0.0012020636 | 13.695231 | 12 |
TGCCCGG | 160 | 7.824399E-5 | 12.65586 | 13 |
ACGCCCA | 160 | 7.824399E-5 | 12.65586 | 12 |
CGCGGTG | 125 | 0.0022505869 | 12.600702 | 6 |
CGCCACC | 210 | 6.310049E-6 | 11.786371 | 5 |
AAAGCGC | 155 | 8.4884267E-4 | 11.613551 | 5 |
GCCCAGC | 460 | 1.8189894E-12 | 10.760539 | 14 |