FastQCFastQC Report
Mon 6 Jun 2016
ERR1378414.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378414.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1155349
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTAT301.1401318E-437.49884432
GACCGGT406.167274E-428.12413429
ACCGGTT500.002265021722.49930830
CCGGTTA500.002265021722.49930831
ACCACGC2200.019.4312219
CGGTTCA750.001110457517.9994459
CCACGCC2500.017.09947410
AGCGCTC1205.172529E-616.8752127
CACGCCC1703.4067853E-815.88186311
CGCTCCA1602.9640432E-715.4682749
CACCACG3100.014.5163118
GCGCTCC1402.229722E-514.4644678
GCGCGGT1301.9252303E-413.8469265
ATGCCCG1150.001202063613.69523112
TGCCCGG1607.824399E-512.6558613
ACGCCCA1607.824399E-512.6558612
CGCGGTG1250.002250586912.6007026
CGCCACC2106.310049E-611.7863715
AAAGCGC1558.4884267E-411.6135515
GCCCAGC4601.8189894E-1210.76053914