FastQCFastQC Report
Mon 6 Jun 2016
ERR1378413.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378413.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1347595
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATA300.005148131429.9993327
GAGCGGT702.8854629E-828.9300736
CGCTTAT702.8876457E-828.92792732
CCGCTTA801.05430445E-725.31193731
CGGTTCA801.05468644E-725.3109979
AGACCGC901.19162E-824.99944528
CGTATGC851.8945684E-723.82299844
TCGTATG851.8945684E-723.82299843
GCGGTTC952.116576E-823.6836838
GACCGCT952.116576E-823.68368329
AGAGCGG903.286168E-722.501175
ACCGCTT903.2885146E-722.499530
TCTCGTA903.2885146E-722.499541
CTCGTAT955.534366E-721.31531542
ATGCCGA1051.4462548E-619.28528622
AGCGCTC1302.7715942E-819.039457
AGCGGTT1102.2554468E-618.4100487
GAGACCG1102.2570475E-618.4086827
CCGAGAC1102.2570475E-618.4086825
CCGCTCC750.00111052417.99968
Produced by FastQC (version 0.11.5)