FastQCFastQC Report
Mon 6 Jun 2016
ERR1378407.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378407.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences895368
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGTC1000.033.74903530
GACCGGT1000.033.74903529
CGTATGC1050.032.1419444
TATCTCG1050.032.1419439
CCGGTCA1050.032.1419431
TCTCGTA1100.030.68094341
CGGTTGT300.00514737729.99914426
CTCGTAT1150.029.34698742
ATCTCGT1200.028.12419740
AGACCGG1250.026.99923128
CGGTCAT1300.025.96079832
GAGACCG1400.025.71355227
TCGTATG1350.024.99928743
AGAGCGG1400.024.1104955
CCGAGAC1400.024.10645725
CGGAAGA1550.023.2290361
GGGTGCG500.002261659822.5043853
TGGCGCG602.467395E-422.49935712
GGCGCGA500.002264597722.49935713
GTATGCC1551.8189894E-1221.77357345