Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378407.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 895368 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGGTC | 100 | 0.0 | 33.749035 | 30 |
GACCGGT | 100 | 0.0 | 33.749035 | 29 |
CGTATGC | 105 | 0.0 | 32.14194 | 44 |
TATCTCG | 105 | 0.0 | 32.14194 | 39 |
CCGGTCA | 105 | 0.0 | 32.14194 | 31 |
TCTCGTA | 110 | 0.0 | 30.680943 | 41 |
CGGTTGT | 30 | 0.005147377 | 29.999144 | 26 |
CTCGTAT | 115 | 0.0 | 29.346987 | 42 |
ATCTCGT | 120 | 0.0 | 28.124197 | 40 |
AGACCGG | 125 | 0.0 | 26.999231 | 28 |
CGGTCAT | 130 | 0.0 | 25.960798 | 32 |
GAGACCG | 140 | 0.0 | 25.713552 | 27 |
TCGTATG | 135 | 0.0 | 24.999287 | 43 |
AGAGCGG | 140 | 0.0 | 24.110495 | 5 |
CCGAGAC | 140 | 0.0 | 24.106457 | 25 |
CGGAAGA | 155 | 0.0 | 23.229036 | 1 |
GGGTGCG | 50 | 0.0022616598 | 22.504385 | 3 |
TGGCGCG | 60 | 2.467395E-4 | 22.499357 | 12 |
GGCGCGA | 50 | 0.0022645977 | 22.499357 | 13 |
GTATGCC | 155 | 1.8189894E-12 | 21.773573 | 45 |