Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378405.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1264841 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 115 | 0.0 | 27.391306 | 43 |
CTCGTAT | 100 | 4.5474735E-11 | 27.0 | 42 |
TATCTCG | 100 | 4.5474735E-11 | 27.0 | 39 |
TCTCGTA | 110 | 5.456968E-12 | 26.590908 | 41 |
CGTATGC | 115 | 9.094947E-12 | 25.434784 | 44 |
CGGTTCA | 115 | 9.094947E-12 | 25.433779 | 9 |
AGACCGC | 100 | 1.3460522E-9 | 24.75 | 28 |
AGCGGTT | 125 | 2.910383E-11 | 23.4 | 7 |
AAATCCG | 50 | 0.0022647346 | 22.5 | 7 |
GACCGCA | 110 | 4.0527084E-9 | 22.499998 | 29 |
CGCACAT | 130 | 5.0931703E-11 | 22.499998 | 32 |
AAGAGCG | 135 | 8.367351E-11 | 21.66838 | 4 |
GCGGTTC | 135 | 8.367351E-11 | 21.666668 | 8 |
GAGACCG | 125 | 7.530616E-10 | 21.599998 | 27 |
CCGCACA | 120 | 1.1053999E-8 | 20.625002 | 31 |
GAGCGGT | 145 | 2.1827873E-10 | 20.172413 | 6 |
CCGAGAC | 140 | 3.088644E-9 | 19.285715 | 25 |
CCCCGGA | 60 | 0.0065034227 | 18.753706 | 1 |
CGACTGT | 60 | 0.006510849 | 18.750002 | 43 |
GCGCCCA | 60 | 0.0065123355 | 18.74926 | 12 |