FastQCFastQC Report
Mon 6 Jun 2016
ERR1378405.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378405.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1264841
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG1150.027.39130643
CTCGTAT1004.5474735E-1127.042
TATCTCG1004.5474735E-1127.039
TCTCGTA1105.456968E-1226.59090841
CGTATGC1159.094947E-1225.43478444
CGGTTCA1159.094947E-1225.4337799
AGACCGC1001.3460522E-924.7528
AGCGGTT1252.910383E-1123.47
AAATCCG500.002264734622.57
GACCGCA1104.0527084E-922.49999829
CGCACAT1305.0931703E-1122.49999832
AAGAGCG1358.367351E-1121.668384
GCGGTTC1358.367351E-1121.6666688
GAGACCG1257.530616E-1021.59999827
CCGCACA1201.1053999E-820.62500231
GAGCGGT1452.1827873E-1020.1724136
CCGAGAC1403.088644E-919.28571525
CCCCGGA600.006503422718.7537061
CGACTGT600.00651084918.75000243
GCGCCCA600.006512335518.7492612