FastQCFastQC Report
Mon 6 Jun 2016
ERR1378403.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378403.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1205144
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA507.160434E-526.9990329
CCTCCGG450.0012265525.0001375
TCTCGTA500.002264054522.50105741
CGGTTCA500.002265146522.4991919
ACCGTAT754.6041474E-520.99924530
ACGGAAC654.2370503E-420.77020643
CCGTATT807.5654774E-519.68679231
CGCGCCC706.9854275E-419.2850211
GAGCGAG1358.575298E-716.66814236
CGGCTAA1501.4234683E-716.49940717
CCGGCTA1654.2019747E-714.99946116
ACCACGC2101.8517312E-914.999469
CGCCCGG1209.755769E-514.99945913
CACCACG2509.640644E-1114.3994828
AGAGCGA1453.1020132E-513.96675435
CGCCACC1801.1223219E-613.7500755
ACCGCGC1150.001202163813.695169
CCCGCCA1352.6519876E-413.3334073
CGTGAGC2451.6147169E-812.8582821
CCGCCAC1403.6065115E-412.8572144
Produced by FastQC (version 0.11.5)