Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378402.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1085280 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCTATT | 20 | 7.0245663E-4 | 45.011105 | 3 |
CTCGTAT | 55 | 6.184564E-11 | 40.907875 | 42 |
GACCGTT | 65 | 3.6743586E-10 | 34.614357 | 29 |
TCTCGTA | 65 | 3.6743586E-10 | 34.614357 | 41 |
CGTATGC | 75 | 4.7293724E-11 | 32.99902 | 44 |
ATTGCGC | 30 | 0.005146721 | 30.000492 | 5 |
GCGGTTC | 90 | 3.965397E-10 | 27.50045 | 8 |
TCGTATG | 90 | 3.965397E-10 | 27.499184 | 43 |
AGACCGT | 85 | 6.4828782E-9 | 26.469803 | 28 |
CGGTTCA | 90 | 1.1912562E-8 | 24.999258 | 9 |
ATCTCGT | 100 | 1.3460522E-9 | 24.749264 | 40 |
GAGACCG | 95 | 2.1158485E-8 | 23.683508 | 27 |
TATCTCG | 105 | 2.3665052E-9 | 23.570728 | 39 |
AAGAGCG | 120 | 4.5110937E-10 | 22.503479 | 4 |
AGCGGTT | 100 | 3.643254E-8 | 22.50037 | 7 |
ACCGTTC | 100 | 3.645073E-8 | 22.499332 | 30 |
CGTTCAG | 120 | 1.1053999E-8 | 20.624388 | 32 |
CCGTTCA | 110 | 9.985888E-8 | 20.453938 | 31 |
CCGAGAC | 115 | 1.5956357E-7 | 19.564636 | 25 |
GAGCGGT | 130 | 5.7808575E-7 | 17.307976 | 6 |