FastQCFastQC Report
Mon 6 Jun 2016
ERR1378402.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378402.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1085280
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTATT207.0245663E-445.0111053
CTCGTAT556.184564E-1140.90787542
GACCGTT653.6743586E-1034.61435729
TCTCGTA653.6743586E-1034.61435741
CGTATGC754.7293724E-1132.9990244
ATTGCGC300.00514672130.0004925
GCGGTTC903.965397E-1027.500458
TCGTATG903.965397E-1027.49918443
AGACCGT856.4828782E-926.46980328
CGGTTCA901.1912562E-824.9992589
ATCTCGT1001.3460522E-924.74926440
GAGACCG952.1158485E-823.68350827
TATCTCG1052.3665052E-923.57072839
AAGAGCG1204.5110937E-1022.5034794
AGCGGTT1003.643254E-822.500377
ACCGTTC1003.645073E-822.49933230
CGTTCAG1201.1053999E-820.62438832
CCGTTCA1109.985888E-820.45393831
CCGAGAC1151.5956357E-719.56463625
GAGCGGT1305.7808575E-717.3079766