FastQCFastQC Report
Mon 6 Jun 2016
ERR1378398.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378398.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1080617
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT551.1277916E-732.72666542
AGACCGC651.4037141E-831.15326928
TCGTATG602.4191468E-729.99944543
GACCGCA654.8737274E-727.69179529
TATCTCG654.8737274E-727.69179539
TCTCGTA654.8737274E-727.69179541
CGTATGC709.308187E-725.7138144
AGCGGTT751.6963968E-624.0017787
CCGCAAT751.6977629E-623.99955731
CGGTTCA802.974959E-622.4995849
GAGACCG802.974959E-622.49958427
CCGAGAC855.032556E-621.17607925
GCGGTTC908.248522E-620.0005558
GAGCGGT951.3148732E-518.948776
ATCTCGT951.315923E-518.94701640
TGCGAGA600.00651094718.74965344
CGGAAGA1002.042706E-518.0038341
ACCGCAA1053.112638E-517.1425430
GGGCGAC800.001710967416.8746928
TCGTATA1205.173437E-616.8746879