Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378398.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1080617 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 55 | 1.1277916E-7 | 32.726665 | 42 |
AGACCGC | 65 | 1.4037141E-8 | 31.153269 | 28 |
TCGTATG | 60 | 2.4191468E-7 | 29.999445 | 43 |
GACCGCA | 65 | 4.8737274E-7 | 27.691795 | 29 |
TATCTCG | 65 | 4.8737274E-7 | 27.691795 | 39 |
TCTCGTA | 65 | 4.8737274E-7 | 27.691795 | 41 |
CGTATGC | 70 | 9.308187E-7 | 25.71381 | 44 |
AGCGGTT | 75 | 1.6963968E-6 | 24.001778 | 7 |
CCGCAAT | 75 | 1.6977629E-6 | 23.999557 | 31 |
CGGTTCA | 80 | 2.974959E-6 | 22.499584 | 9 |
GAGACCG | 80 | 2.974959E-6 | 22.499584 | 27 |
CCGAGAC | 85 | 5.032556E-6 | 21.176079 | 25 |
GCGGTTC | 90 | 8.248522E-6 | 20.000555 | 8 |
GAGCGGT | 95 | 1.3148732E-5 | 18.94877 | 6 |
ATCTCGT | 95 | 1.315923E-5 | 18.947016 | 40 |
TGCGAGA | 60 | 0.006510947 | 18.749653 | 44 |
CGGAAGA | 100 | 2.042706E-5 | 18.003834 | 1 |
ACCGCAA | 105 | 3.112638E-5 | 17.14254 | 30 |
GGGCGAC | 80 | 0.0017109674 | 16.87469 | 28 |
TCGTATA | 120 | 5.173437E-6 | 16.874687 | 9 |