FastQCFastQC Report
Mon 6 Jun 2016
ERR1378392.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378392.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1094073
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA651.5235202E-524.23106441
CGTTAAC702.7035388E-522.49924732
ACGACGC500.002265583722.4982179
GACCGTT754.6035624E-520.99929629
CATTACG550.003937182520.4538630
ACCGTTA807.564521E-519.6868430
GCTCCGC706.9826015E-419.2859536
CGTATGC851.2042609E-418.52963844
CCGTTAA901.8660512E-417.49941431
GAGCGGT1053.110655E-517.143856
ACGCCCG1053.114318E-517.14149912
AGAGCGG1205.16979E-616.8759785
CTCGTAT952.818938E-416.5791542
GCGGTTC952.8209042E-416.5776338
CGGTTCA1104.640333E-516.362349
CCGGCTA1956.493792E-1016.15256716
CGGCTAA1552.067627E-715.96647717
CGCCCGG1552.067627E-715.96647713
GCCCGGC3050.015.49057614
AGCGGTT1056.038066E-414.9994977