FastQCFastQC Report
Mon 6 Jun 2016
ERR1378390.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378390.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences900983
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGT702.1827873E-1135.35653330
CGCGTTA754.7293724E-1132.9994332
AGAGCGG855.456968E-1231.7676855
AGCGGTT801.0004442E-1030.9369667
CCGCGTT801.0004442E-1030.93696631
GGCGACC300.00514710929.99948142
CTCGTAT852.0372681E-1029.11714642
CGGTTCA852.0372681E-1029.1155289
GAGCGGT952.3646862E-1128.4237176
TCTCGTA903.947207E-1027.49952541
GCGGTTC903.965397E-1027.4988
CGGAAGA957.366907E-1026.0680941
ATCTCGT957.421477E-1026.05218140
GACCGCG957.421477E-1026.05218129
GCGTTAT957.421477E-1026.05218133
TCGTATG957.421477E-1026.05218143
CGTATGC1058.54925E-1125.7138444
CGTTATA1058.54925E-1125.7138434
AAGAGCG1001.3405952E-924.755074
TATCTCG1001.3442332E-924.74957339
Produced by FastQC (version 0.11.5)