FastQCFastQC Report
Mon 6 Jun 2016
ERR1378389.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378389.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1106239
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAC352.820542E-432.14240629
CGACTTA352.820542E-432.14240632
CGTATGC500.002264741322.49968544
TCGTATG500.002264741322.49968543
CCGGCTA1700.021.17425716
AGAGCGG550.003933675620.4570315
GCGCGCG550.00393676720.4542587
TCTCGTA550.00393676720.45425841
ACCGCGC550.00393882920.4524089
ACACCCG706.9881533E-419.283712
GAGCGGT600.006505777618.752286
CTCGTAT600.006510873318.74973742
ACCGACT600.006510873318.74973730
AGCGGTT600.006510873318.7497377
GAGACCG600.006510873318.74973727
GACTCCG750.001107600418.0062583
CCGAGAC800.001710950616.87476325
CGGCTAA2201.2732926E-1116.36192717
AGCGAGG850.002565324515.88212924
CCCGGCT2151.5279511E-1015.69603415