Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378389.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1106239 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGAC | 35 | 2.820542E-4 | 32.142406 | 29 |
CGACTTA | 35 | 2.820542E-4 | 32.142406 | 32 |
CGTATGC | 50 | 0.0022647413 | 22.499685 | 44 |
TCGTATG | 50 | 0.0022647413 | 22.499685 | 43 |
CCGGCTA | 170 | 0.0 | 21.174257 | 16 |
AGAGCGG | 55 | 0.0039336756 | 20.457031 | 5 |
GCGCGCG | 55 | 0.003936767 | 20.454258 | 7 |
TCTCGTA | 55 | 0.003936767 | 20.454258 | 41 |
ACCGCGC | 55 | 0.003938829 | 20.452408 | 9 |
ACACCCG | 70 | 6.9881533E-4 | 19.2837 | 12 |
GAGCGGT | 60 | 0.0065057776 | 18.75228 | 6 |
CTCGTAT | 60 | 0.0065108733 | 18.749737 | 42 |
ACCGACT | 60 | 0.0065108733 | 18.749737 | 30 |
AGCGGTT | 60 | 0.0065108733 | 18.749737 | 7 |
GAGACCG | 60 | 0.0065108733 | 18.749737 | 27 |
GACTCCG | 75 | 0.0011076004 | 18.006258 | 3 |
CCGAGAC | 80 | 0.0017109506 | 16.874763 | 25 |
CGGCTAA | 220 | 1.2732926E-11 | 16.361927 | 17 |
AGCGAGG | 85 | 0.0025653245 | 15.882129 | 24 |
CCCGGCT | 215 | 1.5279511E-10 | 15.696034 | 15 |