FastQCFastQC Report
Mon 6 Jun 2016
ERR1378386.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378386.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1359565
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG800.036.56109643
CGTTCTA900.032.49875332
AGACCGT1053.6379788E-1227.85607328
TCTCGTA1004.5474735E-1126.99896241
CTCGTAT1058.54925E-1125.71329942
CGTATGC1159.094947E-1225.43380544
GACCGTT1159.094947E-1225.43380529
ATCTCGT1101.5279511E-1024.54541640
CCGTTCT1305.0931703E-1122.49913631
GCGGTTC1358.367351E-1121.6658348
AGTCCGT550.003936939420.45451438
ACCGTTC1452.1827873E-1020.17163830
CCGAGAC1503.45608E-1019.49925225
AGCGGTT1751.382432E-1017.9999717
GAGACCG1651.2314558E-917.72659327
GAGCGGT1802.0736479E-1017.5012596
CGGAAGA1853.0559022E-1017.033891
ATGCCGA1752.6921043E-916.71364422
CGGTTCA1803.912646E-916.2493769
AATGCCG1855.6243152E-915.81020421