FastQCFastQC Report
Mon 6 Jun 2016
ERR1378385.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378385.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences754342
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC556.002665E-1140.907144
GACCGTC606.4283086E-933.7483629
TCTCGTA606.4283086E-933.7483641
AGACCGT651.4028046E-831.1523328
GAGCGGT751.6989361E-930.0045096
ACCGTCC602.4181463E-729.99854330
CGTCCTA602.4181463E-729.99854332
CCGAGAC751.7025741E-929.9985425
CTCGTAT702.8847353E-828.92716642
TCGTATG803.3924152E-928.12363443
CGGTTCA903.947207E-1027.4986639
AGAGCGG856.4628694E-926.4745665
AGCGGTT856.4683263E-926.4728097
GCGGTTC856.4774213E-926.4693018
ATGCCGA901.1903467E-824.99878522
CCGTCCT751.6970753E-623.99883331
GAGACCG851.8927494E-723.8223727
CGGAAGA1156.717528E-921.533541
AAGAGCG1056.086884E-821.4332124
CCTTCGT754.5805493E-521.0115131