FastQCFastQC Report
Mon 6 Jun 2016
ERR1378384.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378384.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1312957
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGCC551.3688665E-424.54408529
TATCTCG602.4687013E-422.49874539
TCGTATG602.4687013E-422.49874543
GAGCGGT754.6012035E-521.0012266
AGACCGC654.2402724E-420.7680728
AGAGCGG706.981449E-419.286845
CGTATGC706.9868186E-419.28463744
TCTCGTA706.9868186E-419.28463741
ATCTCGT851.2051229E-418.52837640
CGGCTAA1802.0736479E-1017.49902317
GCGGTTC800.001711223616.87478
CTCGTAT800.001711659716.87405842
ACCGCCA800.001711659716.87405830
CGCCATA800.001711659716.87405832
CGGAAGA850.002553368715.8935711
AGCGGTT850.002565730415.8820717
ATGCCGA1004.169373E-415.74912222
CGCCCGG1301.1072161E-515.57605313
ACGCCCG900.003755695414.99916312
CCCGGCT2203.5724952E-914.31738215