Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378384.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1312957 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGCC | 55 | 1.3688665E-4 | 24.544085 | 29 |
TATCTCG | 60 | 2.4687013E-4 | 22.498745 | 39 |
TCGTATG | 60 | 2.4687013E-4 | 22.498745 | 43 |
GAGCGGT | 75 | 4.6012035E-5 | 21.001226 | 6 |
AGACCGC | 65 | 4.2402724E-4 | 20.76807 | 28 |
AGAGCGG | 70 | 6.981449E-4 | 19.28684 | 5 |
CGTATGC | 70 | 6.9868186E-4 | 19.284637 | 44 |
TCTCGTA | 70 | 6.9868186E-4 | 19.284637 | 41 |
ATCTCGT | 85 | 1.2051229E-4 | 18.528376 | 40 |
CGGCTAA | 180 | 2.0736479E-10 | 17.499023 | 17 |
GCGGTTC | 80 | 0.0017112236 | 16.8747 | 8 |
CTCGTAT | 80 | 0.0017116597 | 16.874058 | 42 |
ACCGCCA | 80 | 0.0017116597 | 16.874058 | 30 |
CGCCATA | 80 | 0.0017116597 | 16.874058 | 32 |
CGGAAGA | 85 | 0.0025533687 | 15.893571 | 1 |
AGCGGTT | 85 | 0.0025657304 | 15.882071 | 7 |
ATGCCGA | 100 | 4.169373E-4 | 15.749122 | 22 |
CGCCCGG | 130 | 1.1072161E-5 | 15.576053 | 13 |
ACGCCCG | 90 | 0.0037556954 | 14.999163 | 12 |
CCCGGCT | 220 | 3.5724952E-9 | 14.317382 | 15 |